Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1566

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9933 and 9934 are separated by 834 nucleotides9934 and 9935 are separated by 190 nucleotides mRNA_1565: 9933 - KOG1860 Nuclear protein export factor, at 604,614 to 609,512 9933 mRNA_1566: 9934 - Hypothetical Protein, at 610,347 to 612,663 9934 mRNA_1567: 9935 - KOG4129 Exopolyphosphatases and related proteins, at 612,854 to 615,039 9935

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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609,600 + +1.4
609,605 - +1.1
609,606 - -1.2
609,611 + +0.7
609,612 + +1.8
609,613 - +0.1
609,619 - -0.4
609,770 - -1.0
609,782 + +1.0
609,788 - -1.0
609,806 - +0.0
609,907 - +0.2
609,918 + -1.0
609,936 - -1.0
609,946 + +3.4
609,948 + -0.5
609,968 + -0.0
610,067 + -0.2
610,069 - -1.6
610,075 - -0.4
610,083 + -2.0
610,227 + +0.2
610,264 + +0.2
610,265 + +0.4
610,375 - -0.0
610,376 + +1.9
610,531 + +0.2
611,366 - 9934 mRNA_1566 0.44 +0.9
611,396 + 9934 mRNA_1566 0.45 +1.3
611,398 - 9934 mRNA_1566 0.45 -2.4
611,408 + 9934 mRNA_1566 0.46 +0.1
611,644 + 9934 mRNA_1566 0.56 -0.1
612,380 + 9934 mRNA_1566 0.88 -0.5
612,560 + +0.6
612,707 + +0.1
612,753 - +0.7
613,277 - 9935 mRNA_1567 0.19 +0.8
613,301 - 9935 mRNA_1567 0.20 -0.5

Or see this region's nucleotide sequence