Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1573

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9940 and 9941 are separated by 534 nucleotides9941 and 9942 are separated by 161 nucleotides mRNA_1572: 9940 - K02139 ATPeFF, ATP17 F-type H+-transporting ATPase subunit f, at 624,173 to 624,749 9940 mRNA_1573: 9941 - KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily), at 625,284 to 628,967 9941 mRNA_1574: 9942 - K06867 K06867 uncharacterized protein, at 629,129 to 634,398 9942

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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624,963 + -2.5
625,079 - -2.4
625,265 - +0.2
625,355 + -0.8
625,376 + +0.5
625,393 + -2.1
625,715 - 9941 mRNA_1573 0.12 +1.1
625,808 - 9941 mRNA_1573 0.14 -0.9
626,092 - 9941 mRNA_1573 0.22 -0.8
626,253 + 9941 mRNA_1573 0.26 +0.6
626,872 + 9941 mRNA_1573 0.43 -0.4
626,874 - 9941 mRNA_1573 0.43 -0.3
628,110 + 9941 mRNA_1573 0.77 +0.3
628,710 - -0.2
629,028 + +0.2

Or see this region's nucleotide sequence