Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1576

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9943 and 9944 are separated by 668 nucleotides9944 and 9945 are separated by 187 nucleotides mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634,965 to 635,420 9943 mRNA_1576: 9944 - KOG0737 AAA+-type ATPase, at 636,089 to 637,669 9944 mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637,857 to 639,925 9945

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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635,166 + 9943 mRNA_1575 0.44 -0.8
635,194 + 9943 mRNA_1575 0.50 +1.0
635,201 + 9943 mRNA_1575 0.52 +0.3
635,210 - 9943 mRNA_1575 0.54 +0.3
635,366 + 9943 mRNA_1575 0.88 +2.9
635,371 + 9943 mRNA_1575 0.89 +1.5
635,375 - +0.6
635,467 - -0.1
635,490 + -0.6
635,493 + -0.1
635,506 - +2.1
635,531 + -0.8
635,619 + +0.3
635,637 + -0.0
635,758 + +0.2
635,762 + -0.7
635,784 - +2.7
635,918 + +0.4
635,936 - -1.9
635,952 + -0.5
636,075 + +1.8
636,080 + -0.7
636,087 - -2.5
636,087 + +0.6
636,767 - 9944 mRNA_1576 0.43 +0.4
636,916 + 9944 mRNA_1576 0.52 +0.4
637,395 + 9944 mRNA_1576 0.83 +1.4
637,674 + -0.6
637,783 + -0.1
637,795 + +1.4
637,808 + +0.8
637,827 + +0.7

Or see this region's nucleotide sequence