Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1598

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9965 and 9966 are separated by 267 nucleotides9966 and 9967 are separated by 407 nucleotides mRNA_1597: 9965 - Hypothetical Protein, at 688,667 to 689,443 9965 mRNA_1598: 9966 - Hypothetical Protein, at 689,711 to 690,052 9966 mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690,460 to 691,819 9967

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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689,344 + 9965 mRNA_1597 0.87 -0.8
689,416 + -0.5
689,508 + -1.4
689,522 + -3.1
689,565 + -1.6
689,829 + 9966 mRNA_1598 0.35 +1.0
690,286 + +2.1
690,460 - +0.1
690,549 - -0.2
690,568 + -0.8
690,833 - 9967 mRNA_1599 0.27 -0.5
690,877 - 9967 mRNA_1599 0.31 +0.3
690,976 - 9967 mRNA_1599 0.38 +0.1
691,014 - 9967 mRNA_1599 0.41 -0.3

Or see this region's nucleotide sequence