Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1610

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9978 and 9979 are separated by 144 nucleotides mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714,472 to 715,757 9978 mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266 9979

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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714,074 + +0.4
714,536 - -4.4
715,014 + 9978 mRNA_1610 0.42 +0.0
715,262 + 9978 mRNA_1610 0.61 -0.1
715,527 + 9978 mRNA_1610 0.82 +0.2
715,563 - 9978 mRNA_1610 0.85 -0.4
715,584 + 9978 mRNA_1610 0.86 +0.1
715,629 - -2.0
715,700 + -0.5
715,834 + +0.4
715,854 + -0.3
715,859 + -0.3
715,859 + +0.8
715,996 + +0.6

Or see this region's nucleotide sequence