Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1611

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9978 and 9979 are separated by 144 nucleotides9979 and 9980 are separated by 261 nucleotides mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714,472 to 715,757 9978 mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266 9979 mRNA_1612: 9980 - Hypothetical Protein, at 717,528 to 719,368 9980

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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715,014 + 9978 mRNA_1610 0.42 +0.0
715,262 + 9978 mRNA_1610 0.61 -0.1
715,527 + 9978 mRNA_1610 0.82 +0.2
715,563 - 9978 mRNA_1610 0.85 -0.4
715,584 + 9978 mRNA_1610 0.86 +0.1
715,629 - -2.0
715,700 + -0.5
715,834 + +0.4
715,854 + -0.3
715,859 + -0.3
715,859 + +0.8
715,996 + +0.6
717,311 + -1.3
717,921 - 9980 mRNA_1612 0.21 -0.0
718,184 + 9980 mRNA_1612 0.36 -0.0
718,242 + 9980 mRNA_1612 0.39 +1.9

Or see this region's nucleotide sequence