Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1626

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9993 and 9994 are separated by 94 nucleotides9994 and 9995 are separated by 228 nucleotides mRNA_1625: 9993 - Hypothetical Protein, at 750,034 to 750,701 9993 mRNA_1626: 9994 - Hypothetical Protein, at 750,796 to 751,505 9994 mRNA_1627: 9995 - K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase, at 751,734 to 753,010 9995

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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749,976 - -0.5
750,632 - 9993 mRNA_1625 0.90 +0.8
750,797 - -0.0
750,825 + -1.8
750,992 - 9994 mRNA_1626 0.28 +1.4
750,993 + 9994 mRNA_1626 0.28 +0.3
751,044 + 9994 mRNA_1626 0.35 +1.9
751,155 + 9994 mRNA_1626 0.51 +0.1
751,328 + 9994 mRNA_1626 0.75 +1.3
751,597 - +1.3
751,614 + -0.6
752,068 + 9995 mRNA_1627 0.26 -0.6
752,287 - 9995 mRNA_1627 0.43 -0.1

Or see this region's nucleotide sequence