Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1631

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9998 and 9999 are separated by 357 nucleotides mRNA_1630: 9998 - SUPERFAMILY--SSF81383, at 756,759 to 757,602 9998 mRNA_1631: 9999 - BLAST Tyrosine-protein phosphatase non-receptor type 23 [St..., at 757,960 to 758,498 9999

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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756,985 - 9998 mRNA_1630 0.27 -0.7
757,006 - 9998 mRNA_1630 0.29 -0.1
757,018 - 9998 mRNA_1630 0.31 +0.7
757,266 + 9998 mRNA_1630 0.60 +2.7
757,447 + 9998 mRNA_1630 0.82 +1.2
757,583 + +0.5
757,588 + +0.9
757,721 + -0.4
757,732 + +0.4
757,740 - +0.4
757,741 + +0.0
757,773 + +0.1
757,803 - +0.9
757,811 - +0.7
757,856 + -0.3
757,858 - -1.8
757,865 - -1.8
757,867 + -0.5
757,872 + -0.3
757,880 - -0.1
757,886 + +0.5
757,921 + -0.1
757,993 + -1.4
758,198 + 9999 mRNA_1631 0.44 -0.3
758,206 + 9999 mRNA_1631 0.46 -2.4
758,530 + +0.3
758,574 + -0.2
758,748 - -0.6
758,816 + -0.0
758,822 - +0.1
758,835 + -0.5
758,905 + -0.0
758,906 + -1.8
758,927 + -0.8
758,932 - -2.4
758,934 - +0.4
758,943 + +1.7
758,944 + -1.0
759,158 + -1.9
759,159 - +0.5
759,175 - -0.6
759,178 - +0.9
759,184 - -3.7
759,186 - +2.1
759,188 - +0.1
759,193 - -0.2
759,197 - -0.9
759,203 + -0.0

Or see this region's nucleotide sequence