Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1652

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10019 and 10020 are separated by 567 nucleotides10020 and 10021 are separated by 915 nucleotides mRNA_1651: 10019 - SUPERFAMILY--SSF69047, at 811,349 to 811,874 10019 mRNA_1652: 10020 - Hypothetical Protein, at 812,442 to 813,114 10020 mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626 10021

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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811,769 - 10019 mRNA_1651 0.80 +0.4
811,877 + +0.5
811,938 + +0.9
811,946 - +0.7
812,244 + -2.0
812,281 + +0.9
812,497 - +0.6
812,499 - -1.2
812,499 + -0.3
812,503 + -0.2
812,507 + +0.4
812,517 - 10020 mRNA_1652 0.11 -0.4
812,671 + 10020 mRNA_1652 0.34 -0.3
812,836 + 10020 mRNA_1652 0.59 -0.0
813,407 - +0.3
813,523 - -0.5
813,536 - +0.3
813,547 + +1.3
813,618 + +0.6
813,619 - -0.1
813,647 - +1.8
813,702 + +0.8

Or see this region's nucleotide sequence