Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1735

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10102 and 10103 are separated by 963 nucleotides mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843 10103

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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72,165 + -2.3
72,196 - +0.6
72,213 + +0.8
72,285 - +0.5
72,774 + -0.3
72,827 + -1.0
72,899 - +2.7
76,924 + +0.1
76,936 - +0.1
76,938 - -0.4
76,941 + -1.5
76,952 + +1.8
76,962 + +0.7
77,075 + -0.6
77,091 - +1.2
77,105 + +0.3
77,109 - +1.4
77,111 - +0.3
77,176 - -1.0
77,221 - +1.6
77,224 - -0.0
77,234 + -0.1
77,241 + +0.3
77,242 + -0.3
77,251 + +0.1
77,251 + +1.9
77,256 + +0.0
77,260 - +1.8
77,261 + +0.4
77,262 + -0.3
77,262 - +0.0
77,291 + +0.2
77,294 - +0.1
77,295 - -0.3
77,324 + +0.3
77,334 - +2.2
77,339 - +0.6
77,345 - +0.4
77,350 - -0.0
77,350 + +1.1
77,351 + -0.4
77,353 + -0.1
77,360 + +0.4
77,373 - +0.3
77,374 - +0.0
77,386 + +0.1
77,394 - +0.2
77,396 + -1.3
77,399 - +1.5
77,400 + -0.0
77,400 + +0.3
77,407 + +0.8
77,412 - +1.1
77,421 + -0.2
77,422 + +0.7
77,425 + +0.1
77,427 + -0.4
77,427 + +0.4
77,434 + +1.1
77,717 + +0.4
77,722 + +1.5

Or see this region's nucleotide sequence