Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1896

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10263 and 10264 are separated by 498 nucleotides10264 and 10265 are separated by 372 nucleotides mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452,374 to 455,740 10263 mRNA_1896: 10264 - K00844 HK hexokinase, at 456,239 to 458,071 10264 mRNA_1897: 10265 - K07443 ybaZ methylated-DNA-protein-cysteine methyltransferase related protein, at 458,444 to 459,156 10265

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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455,244 - 10263 mRNA_1895 0.85 +1.1
455,321 - 10263 mRNA_1895 0.88 -1.0
455,622 - -1.5
455,627 + -0.0
455,637 + +0.3
455,645 + -0.3
455,656 + -0.8
455,776 - +0.3
455,798 - +1.1
455,824 + +0.8
455,922 - +2.7
455,934 - -2.2
455,950 - -0.1
455,955 + +0.6
455,955 + -0.5
455,957 + -0.1
455,963 + +0.1
455,968 + +0.5
455,968 + -0.5
455,970 - -0.8
456,078 - +0.4
456,098 - +0.6
456,102 - -0.3
456,122 + +1.4
456,226 - -0.4
456,243 + -1.9
456,264 - +0.2
456,393 - -2.6
456,408 - -1.2
456,524 + 10264 mRNA_1896 0.16 -1.8
456,533 - 10264 mRNA_1896 0.16 -2.4
456,538 - 10264 mRNA_1896 0.16 -1.1
456,546 + 10264 mRNA_1896 0.17 -2.5
456,549 + 10264 mRNA_1896 0.17 -2.2
456,550 + 10264 mRNA_1896 0.17 -2.0
456,558 + 10264 mRNA_1896 0.17 -1.6
456,564 + 10264 mRNA_1896 0.18 -2.3
456,583 - 10264 mRNA_1896 0.19 -3.4
456,991 - 10264 mRNA_1896 0.41 -0.1
456,997 + 10264 mRNA_1896 0.41 -3.5
457,295 - 10264 mRNA_1896 0.58 -1.2
457,433 - 10264 mRNA_1896 0.65 -2.6
457,742 + 10264 mRNA_1896 0.82 -2.5
457,782 + 10264 mRNA_1896 0.84 -1.0
457,872 + 10264 mRNA_1896 0.89 -0.0
457,906 + -2.3
458,030 - +0.3
458,032 - -0.5
458,043 - -2.9
458,044 + +1.6
458,046 + +0.4
458,047 + +1.1
458,120 + +0.9
458,122 - +0.6
458,140 - -0.3
458,175 - +0.3
458,238 + +1.0
458,250 - -0.1
458,254 - +0.9
458,257 + +1.2
458,266 + +0.4
458,294 - +0.4
458,341 + +0.3
458,343 + +1.1
458,458 - -0.9
458,459 + -1.4
458,466 - +0.4
458,483 - +0.5
458,529 - 10265 mRNA_1897 0.12 +0.3
458,602 + 10265 mRNA_1897 0.22 +1.4
458,676 + 10265 mRNA_1897 0.33 +0.2
458,851 + 10265 mRNA_1897 0.57 +0.0
458,873 - 10265 mRNA_1897 0.60 +0.8
458,879 - 10265 mRNA_1897 0.61 +0.3
458,887 + 10265 mRNA_1897 0.62 +0.3
458,887 - 10265 mRNA_1897 0.62 -0.6
458,900 - 10265 mRNA_1897 0.64 -1.0
458,912 - 10265 mRNA_1897 0.66 +0.1
458,918 - 10265 mRNA_1897 0.66 +0.7
458,923 - 10265 mRNA_1897 0.67 +0.1
458,946 + 10265 mRNA_1897 0.70 -1.3
458,950 - 10265 mRNA_1897 0.71 +1.5
458,975 - 10265 mRNA_1897 0.74 -0.5

Or see this region's nucleotide sequence