Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1969

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10336 and 10337 are separated by 298 nucleotides10337 and 10338 are separated by 365 nucleotides mRNA_1968: 10336 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 633,859 to 635,339 10336 mRNA_1969: 10337 - K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1, at 635,638 to 637,721 10337 mRNA_1970: 10338 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 638,087 to 640,268 10338

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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634,825 - 10336 mRNA_1968 0.65 -0.1
635,258 - -0.4
635,420 + -0.1
635,511 - +1.4
635,532 - +1.0
635,546 - -0.6
635,559 + +1.5
635,705 + +0.0
635,848 - 10337 mRNA_1969 0.10 +0.1
636,142 - 10337 mRNA_1969 0.24 -1.8
637,606 - -0.8
637,873 - +0.7
637,896 - +1.1
637,905 - +0.9
638,024 - +1.0
638,144 - -2.2
638,189 + +0.6
638,460 + 10338 mRNA_1970 0.17 +0.1
638,461 + 10338 mRNA_1970 0.17 +0.4
638,658 + 10338 mRNA_1970 0.26 +0.7

Or see this region's nucleotide sequence