Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2022

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10389 and 10390 are separated by 271 nucleotides10390 and 10391 are separated by 203 nucleotides mRNA_2021: 10389 - BLAST deacetylase-like protein [Drechmeria coniospora], at 765,421 to 766,356 10389 mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766,628 to 767,371 10390 mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767,575 to 770,006 10391

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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765,699 - 10389 mRNA_2021 0.30 +0.8
766,253 - 10389 mRNA_2021 0.89 -0.0
766,278 - -0.9
766,308 + -0.6
766,399 - -0.1
766,399 + +0.6
766,400 - +0.4
766,402 - +0.1
766,545 - +0.2
766,710 - 10390 mRNA_2022 0.11 +2.5
766,725 - 10390 mRNA_2022 0.13 -0.1
766,731 + 10390 mRNA_2022 0.14 +1.5
766,850 + 10390 mRNA_2022 0.30 +1.2
766,988 - 10390 mRNA_2022 0.48 +0.0
767,181 - 10390 mRNA_2022 0.74 -0.3
767,274 + 10390 mRNA_2022 0.87 +0.8
767,415 - +0.1
767,538 - +0.0
767,710 - -2.7
767,753 + -0.2
768,148 + 10391 mRNA_2023 0.24 +0.5

Or see this region's nucleotide sequence