Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2160

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10528 and 10529 are separated by 233 nucleotides mRNA_2160: 10528 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 219,379 to 220,731 10528 mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220,965 to 223,272 10529

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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218,754 - +0.3
219,338 + +0.0
219,696 + 10528 mRNA_2160 0.23 +2.5
219,759 - 10528 mRNA_2160 0.28 -0.7
219,924 + 10528 mRNA_2160 0.40 +0.1
220,164 + 10528 mRNA_2160 0.58 -0.3
220,241 + 10528 mRNA_2160 0.64 +1.4
220,372 - 10528 mRNA_2160 0.73 +1.4
220,400 + 10528 mRNA_2160 0.75 +0.8
220,622 + -0.1
220,663 - -0.4
220,727 - -0.6
220,837 + -0.3
220,931 - -0.8
221,393 - 10529 mRNA_2161 0.19 -1.2
221,698 - 10529 mRNA_2161 0.32 +0.5

Or see this region's nucleotide sequence