Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2161

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10528 and 10529 are separated by 233 nucleotides10529 and 10530 are separated by 339 nucleotides mRNA_2160: 10528 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 219,379 to 220,731 10528 mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220,965 to 223,272 10529 mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223,612 to 225,989 10530

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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220,164 + 10528 mRNA_2160 0.58 -0.3
220,241 + 10528 mRNA_2160 0.64 +1.4
220,372 - 10528 mRNA_2160 0.73 +1.4
220,400 + 10528 mRNA_2160 0.75 +0.8
220,622 + -0.1
220,663 - -0.4
220,727 - -0.6
220,837 + -0.3
220,931 - -0.8
221,393 - 10529 mRNA_2161 0.19 -1.2
221,698 - 10529 mRNA_2161 0.32 +0.5
221,770 - 10529 mRNA_2161 0.35 +0.1
221,834 + 10529 mRNA_2161 0.38 -0.1
221,997 + 10529 mRNA_2161 0.45 -0.3
222,260 - 10529 mRNA_2161 0.56 +1.1
222,414 + 10529 mRNA_2161 0.63 +1.2
222,454 + 10529 mRNA_2161 0.65 +0.3
222,870 - 10529 mRNA_2161 0.83 -0.2
222,897 + 10529 mRNA_2161 0.84 +0.2
222,972 - 10529 mRNA_2161 0.87 +0.6
223,126 + -0.9
223,293 - -0.7
223,306 - -0.8
223,702 - -0.2
223,888 - 10530 mRNA_2162 0.12 -0.4
223,940 - 10530 mRNA_2162 0.14 -0.5
224,138 + 10530 mRNA_2162 0.22 -1.1

Or see this region's nucleotide sequence