Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2244

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10611 and 10612 are separated by 803 nucleotides10612 and 10613 are separated by 943 nucleotides mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450,168 to 452,098 10611 mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452,902 to 454,246 10612 mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455,190 to 456,884 10613

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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452,007 - -0.3
452,021 - -0.4
452,036 + -0.1
452,182 - -0.9
452,193 + -0.2
452,201 + +0.8
452,214 + -0.5
452,217 + -0.1
452,220 + +0.4
452,222 + -0.2
452,226 - -0.1
452,231 + +1.5
452,241 + +1.4
452,245 + -0.4
452,264 - +0.6
452,283 - +1.3
452,286 + +1.1
452,288 + -0.4
452,294 - +0.0
452,295 + -0.1
452,298 - +1.9
452,313 - +1.2
452,339 + +1.6
452,350 - +1.2
452,359 + +0.2
452,362 + +0.2
452,372 - +1.7
452,385 - +0.6
452,388 - +0.5
452,400 + +0.1
452,409 + -0.6
452,410 - +1.6
452,415 - +0.2
452,432 - +0.0
452,441 - +1.0
452,443 + -0.8
452,445 + +0.3
452,453 - +2.5
452,458 - +0.7
452,458 - -0.1
452,460 - +0.3
452,461 - +2.0
452,475 + +0.6
452,480 + +0.7
452,480 + +1.3
452,488 - -0.5
452,490 - -0.6
452,490 - +1.3
452,495 + +0.8
452,499 + +0.7
452,499 + +0.4
452,500 + +0.4
452,503 - -0.3
452,506 - -0.2
452,506 - +0.1
452,522 - +0.1
452,522 - +0.9
452,522 - +0.5
452,540 - +0.9
452,559 + -1.6
452,578 + +0.1
452,605 + +0.1
452,623 - -0.1
452,631 + +0.2
452,631 - +0.2
452,635 + +0.9
452,649 + -1.0
452,666 - -0.7
452,773 - -1.3
452,782 + +0.0
452,798 + +1.1
452,811 + +0.1
452,917 - -0.7
452,928 + +0.4
453,205 - 10612 mRNA_2244 0.23 +0.8
453,220 + 10612 mRNA_2244 0.24 +0.7
453,643 - 10612 mRNA_2244 0.55 +0.5
454,227 - +1.5
454,238 - +0.6
454,238 - -1.1
454,356 - +0.3
454,399 + -0.2
454,501 - +0.2
454,509 + +0.2
454,787 - +1.1
454,787 - -1.4
454,798 + +0.2
454,804 - -2.6
454,812 + +0.4
454,814 - -1.7
454,814 - +0.6
454,838 - -0.4
454,838 - +0.4
454,838 - +0.2
454,846 + +0.2
454,852 - -0.1
454,873 + -1.6
454,874 - +0.6
454,876 + -0.1
454,877 + +0.2
454,879 + +0.2
454,916 - +0.6
454,932 - -2.0
454,933 + +0.7
454,933 + -0.5
454,937 + -1.0
454,937 + -0.8
454,939 + -0.2
454,939 - -1.5
454,939 - -1.0
454,939 + -0.2
454,940 - -1.6
454,947 + -0.3
454,948 + +0.4
454,949 + -0.6
454,950 + +0.4
454,951 - -1.8
454,958 - +2.0
454,969 + +0.7
454,973 + -1.7
454,984 - -0.2
454,984 - +0.1
455,081 - +0.2
455,086 + +0.7
455,088 - -0.4
455,104 - +0.1
455,104 - -0.6
455,104 - +0.3
455,106 - -1.1
455,116 - -1.0
455,122 + -1.6
455,123 + +1.0
455,123 - -0.2
455,123 + -0.2
455,124 + -1.6

Or see this region's nucleotide sequence