Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2380

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10747 and 10748 are separated by 364 nucleotides10748 and 10749 are separated by 647 nucleotides mRNA_2379: 10747 - HMMPfam-DASH complex subunit Duo1-PF08651, at 754,598 to 756,012 10747 mRNA_2380: 10748 - K07889 RAB5C Ras-related protein Rab-5C, at 756,377 to 757,308 10748 mRNA_2381: 10749 - KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, at 757,956 to 760,560 10749

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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755,397 + 10747 mRNA_2379 0.56 +1.1
755,822 + 10747 mRNA_2379 0.87 +0.1
755,838 + 10747 mRNA_2379 0.88 -1.8
756,108 - +1.0
756,300 + +0.6
756,396 - +0.1
756,398 + -0.3
756,723 - 10748 mRNA_2380 0.37 -0.6
757,025 - 10748 mRNA_2380 0.70 +1.3
757,303 + +0.2
757,461 - +0.1
757,607 + -0.2
757,630 + -0.5
757,715 - -1.0
757,865 - +0.5
757,877 + +1.2
757,879 - +1.5
757,881 - +0.3

Or see this region's nucleotide sequence