Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2390

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10757 and 10758 are separated by 709 nucleotides10758 and 10759 are separated by 324 nucleotides mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4,587 to 7,344 10757 mRNA_2390: 10758 - Hypothetical Protein, at 8,054 to 9,276 10758 mRNA_2391: 10759 - HMMPfam-Chaperone for protein-folding within the ER, fungal-PF10681, at 9,601 to 10,907 10759

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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7,171 - -1.5
7,187 - -1.1
7,191 + -0.2
7,214 + -1.0
7,310 + +0.9
7,337 + +0.5
7,360 + +1.1
7,820 - -0.4
8,472 - 10758 mRNA_2390 0.34 -2.9
8,619 + 10758 mRNA_2390 0.46 -1.0
8,619 + 10758 mRNA_2390 0.46 -0.0
8,903 + 10758 mRNA_2390 0.69 +0.3
9,046 + 10758 mRNA_2390 0.81 -0.5
9,171 - +0.6
9,179 - +0.1
9,181 - -1.6
9,320 - +0.1
9,327 - +0.4
9,329 + -0.1
9,427 - +1.3
9,522 - +0.3
9,525 - +1.9
9,525 + -0.3
9,540 - -0.6

Or see this region's nucleotide sequence