Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2407

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10774 and 10775 are separated by 99 nucleotides10775 and 10776 are separated by 228 nucleotides mRNA_2406: 10774 - KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22, at 52,047 to 52,986 10774 mRNA_2407: 10775 - K10880 XRCC3 DNA-repair protein XRCC3, at 53,086 to 55,006 10775 mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55,235 to 56,824 10776

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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52,120 - -0.0
52,842 - 10774 mRNA_2406 0.85 +1.4
52,852 + 10774 mRNA_2406 0.86 +1.0
52,865 + 10774 mRNA_2406 0.87 +0.7
52,870 - 10774 mRNA_2406 0.88 +0.9
53,113 + +0.4
53,857 + 10775 mRNA_2407 0.40 -0.2
54,129 - 10775 mRNA_2407 0.54 -1.8
54,324 - 10775 mRNA_2407 0.64 +0.1
55,274 - -1.6
55,304 + -0.3
55,597 - 10776 mRNA_2408 0.23 +1.1
55,740 + 10776 mRNA_2408 0.32 -0.5

Or see this region's nucleotide sequence