Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2429

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10796 and 10797 are separated by 231 nucleotides10797 and 10798 are separated by 675 nucleotides mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96,972 to 102,025 10796 mRNA_2429: 10797 - K03347 CUL1, CDC53 cullin 1, at 102,257 to 105,935 10797 mRNA_2430: 10798 - K09467 MIG zinc-finger protein CreA/MIG, at 106,611 to 109,400 10798

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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101,366 + 10796 mRNA_2428 0.87 +0.2
101,387 - 10796 mRNA_2428 0.87 -0.3
101,397 - 10796 mRNA_2428 0.88 -0.1
101,517 - 10796 mRNA_2428 0.90 -1.1
101,543 + -0.3
101,546 - +1.9
101,675 + +0.0
101,683 + -0.9
101,849 + +2.3
101,914 + +0.3
101,963 + -2.2
101,990 - +0.5
102,217 + -1.5
102,251 - -0.3
105,976 - -0.1
105,999 - +0.4
106,213 + +0.7
106,791 + -0.3
106,848 + -0.4
106,850 - -0.1
106,925 - 10798 mRNA_2430 0.11 +0.8

Or see this region's nucleotide sequence