Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2438

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10806 and 10807 are separated by 213 nucleotides mRNA_2438: 10806 - HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224, at 131,945 to 132,522 10806 mRNA_2439: 10807 - BLAST ribosome biogenesis protein [Moniliophthora rorer..., at 132,736 to 133,822 10807

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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130,946 + +0.4
130,948 - -0.1
130,986 - +0.8
131,063 - +1.6
131,067 + +0.9
131,067 - +0.6
131,069 - +0.5
131,153 + +0.8
131,158 - +0.2
131,169 - +1.1
131,183 - +0.9
131,196 - +1.1
131,205 - -0.1
131,206 - +0.9
131,207 + +0.3
131,230 + +0.0
131,233 + +0.3
131,239 + +0.8
131,252 + +0.2
131,263 - +0.5
131,264 + +0.9
131,271 - +2.1
131,286 - +0.0
131,374 - -0.5
131,390 - +0.6
131,405 + +0.3
131,825 + +1.2
132,276 + 10806 mRNA_2438 0.57 +1.0
132,540 - +1.0
132,544 - +0.6
132,547 - +1.5
132,548 + -0.7
132,566 + +0.6
132,573 - +0.3
132,573 + +1.5
132,575 + -0.5
132,713 - +0.6
132,728 + +0.9
132,730 + -1.6
132,731 + -0.7

Or see this region's nucleotide sequence