Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2621

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10988 and 10989 are separated by 338 nucleotides10989 and 10990 are separated by 345 nucleotides mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609,303 to 611,052 10988 mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611,391 to 613,373 10989 mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613,719 to 614,794 10990

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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610,424 - 10988 mRNA_2620 0.64 -0.1
610,453 - 10988 mRNA_2620 0.66 -0.5
610,570 - 10988 mRNA_2620 0.72 -0.1
610,864 + 10988 mRNA_2620 0.89 +1.9
610,881 - +1.8
610,885 + -0.8
610,901 - +0.8
611,012 - -0.1
611,025 + +0.1
611,106 + -0.2
611,132 - +0.3
611,143 - -0.4
611,153 - -0.1
611,153 - -0.3
611,153 - -0.7
611,162 + +0.7
611,164 - +0.6
611,165 + +0.3
611,166 + +0.1
611,180 + +1.1
611,182 - +0.6
611,182 + -0.2
611,183 - +0.1
611,184 - -0.3
611,184 - +1.3
611,184 - -0.2
611,190 - +0.6
611,194 + +1.0
611,199 + +0.0
611,199 + -1.5
611,209 + +0.0
611,209 + +1.1
611,210 + +0.4
611,210 + -1.1
611,210 - -0.7
611,211 + -1.0
611,245 + -0.4
611,246 - +0.3
611,246 - +1.0
611,252 + +1.0
611,254 + +0.2
611,263 + -1.8
611,265 + -0.4
611,300 - -1.1
611,302 - +0.5
611,314 + -0.0
611,314 - +1.0
611,316 - +0.4
611,320 - -1.0
611,330 + -0.3
611,332 + +0.0
611,334 + +0.6
611,338 - +0.1
611,341 - +0.5
611,355 - +0.3
611,363 + +1.0
611,455 - +1.1
611,476 + +1.2
611,612 + 10989 mRNA_2621 0.11 +0.5
611,614 - 10989 mRNA_2621 0.11 +0.7
611,632 - 10989 mRNA_2621 0.12 +1.4
611,632 - 10989 mRNA_2621 0.12 +1.8
611,682 - 10989 mRNA_2621 0.15 +1.2
611,746 - 10989 mRNA_2621 0.18 +0.6
611,748 - 10989 mRNA_2621 0.18 +1.5
611,749 - 10989 mRNA_2621 0.18 +0.5
611,773 + 10989 mRNA_2621 0.19 +0.6
611,792 + 10989 mRNA_2621 0.20 +2.8
611,793 - 10989 mRNA_2621 0.20 +2.9
611,805 - 10989 mRNA_2621 0.21 +0.8
611,812 + 10989 mRNA_2621 0.21 +0.3
611,819 - 10989 mRNA_2621 0.22 +0.7
611,848 + 10989 mRNA_2621 0.23 +2.8
611,891 - 10989 mRNA_2621 0.25 +1.7
611,906 - 10989 mRNA_2621 0.26 +1.2
611,929 - 10989 mRNA_2621 0.27 +0.2
611,982 + 10989 mRNA_2621 0.30 -0.9
612,051 - 10989 mRNA_2621 0.33 +1.1
612,063 + 10989 mRNA_2621 0.34 +0.9
612,092 + 10989 mRNA_2621 0.35 -0.1
612,350 - 10989 mRNA_2621 0.48 +0.6
612,502 + 10989 mRNA_2621 0.56 +1.1
612,583 - 10989 mRNA_2621 0.60 -0.4
612,590 - 10989 mRNA_2621 0.60 +1.0
612,619 - 10989 mRNA_2621 0.62 +0.9
612,661 + 10989 mRNA_2621 0.64 -1.8
612,757 - 10989 mRNA_2621 0.69 +0.3
612,769 - 10989 mRNA_2621 0.69 +0.6
612,773 - 10989 mRNA_2621 0.70 +0.5
613,053 - 10989 mRNA_2621 0.84 +1.3
613,083 + 10989 mRNA_2621 0.85 -0.3
613,213 - +1.1
613,369 - -0.7
613,463 - -0.1
613,465 - -1.3
613,466 + +0.7
613,480 - +0.7
613,514 + -0.3
613,514 - +0.3
613,516 - +0.2
613,521 + +0.5
613,530 + +1.2
613,658 + +0.1
613,788 - -0.6
613,865 + 10990 mRNA_2622 0.14 +0.2
613,946 - 10990 mRNA_2622 0.21 -0.1
614,053 + 10990 mRNA_2622 0.31 -0.6

Or see this region's nucleotide sequence