Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2661

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11028 and 11029 are separated by 98 nucleotides mRNA_2660: 11028 - Hypothetical Protein, at 700,726 to 702,526 11028 mRNA_2661: 11029 - Interpro GDP-fucose protein O-fucosyltransferase, at 702,625 to 704,593 11029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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702,007 + 11028 mRNA_2660 0.71 +0.3
702,354 - -2.0
702,462 + +2.2
702,523 - +0.8
702,589 + -0.5
703,392 - 11029 mRNA_2661 0.39 +0.7
703,829 + 11029 mRNA_2661 0.61 -0.6
704,089 + 11029 mRNA_2661 0.74 +0.5
704,094 - 11029 mRNA_2661 0.75 +1.7
704,831 + +1.1
704,953 - +1.5
704,958 + +0.2
704,964 - -0.1
704,973 + -1.4
704,979 + -1.1
704,995 + -0.4
705,012 + +1.2
705,108 - +0.6
705,120 - -0.0
705,120 - -0.1
705,122 - -1.8
705,127 + +0.6
705,132 - +0.1
705,134 - +0.0
705,137 - +0.9
705,140 - -0.2
705,140 - -0.7
705,142 + +0.4
705,149 - -0.0
705,149 - -0.0
705,151 + -0.4
705,153 - +0.2
705,172 + +0.4
705,182 + -0.3
705,184 - +1.9
705,191 + -0.2
705,203 - +0.3
705,216 + +0.9
705,216 + -0.5
705,224 - +1.7
705,226 + -0.6
705,227 + -2.2
705,235 - -0.3
705,238 - +0.6
705,240 + -2.2
705,243 + -0.2
705,244 + +0.7
705,249 + +0.1
705,252 + +0.6
705,254 - +0.7
705,257 + -0.6
705,315 + +1.4
705,342 + -1.2
705,347 - +0.1
705,354 + -1.3
705,354 + +0.3
705,363 - -0.3
705,373 - -0.3
705,379 - -0.4
705,380 - +0.4
705,386 - +0.4
705,388 - +0.3
705,394 + +0.7
705,402 - -0.9
705,436 + +0.3
705,439 + -0.9
705,441 - +0.0
705,448 + +0.2
705,455 - +1.9
705,464 + +0.5
705,489 - -2.4
705,499 - +1.5
705,508 + +0.1
705,512 - +0.2
705,513 - -0.3
705,515 - +0.4
705,516 - +2.0
705,520 - -0.4
705,524 + +0.4
705,530 + -0.2
705,530 + -0.3
705,531 - +0.4
705,532 + +1.9
705,533 + -0.4
705,534 + +0.3
705,536 + -0.3
705,540 - +1.1
705,541 - +0.6
705,543 - +1.4
705,545 - +1.8
705,546 - +1.4
705,548 + +0.2
705,551 - -0.6
705,552 + +0.5
705,553 + +0.7
705,556 - +1.0
705,561 + +0.1
705,562 + +0.1
705,563 - -0.8
705,564 + -0.3
705,565 + +0.2
705,569 + +0.5
705,569 + +1.6
705,576 - -1.0
705,582 - +0.0
705,588 - -1.1
705,592 + -1.0

Or see this region's nucleotide sequence