Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2668

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11035 and 11036 are separated by 109 nucleotides11036 and 11037 are separated by 290 nucleotides mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717,860 to 720,887 11035 mRNA_2668: 11036 - K00049 GRHPR glyoxylate/hydroxypyruvate reductase, at 720,997 to 722,358 11036 mRNA_2669: 11037 - Hypothetical Protein, at 722,649 to 723,844 11037

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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720,083 + 11035 mRNA_2667 0.73 +0.5
720,145 - 11035 mRNA_2667 0.75 +0.4
720,168 - 11035 mRNA_2667 0.76 +0.3
720,462 + 11035 mRNA_2667 0.86 -0.9
720,574 - 11035 mRNA_2667 0.90 -0.0
720,883 - -0.0
720,908 - +1.3
720,909 + -0.4
720,938 - -1.3
721,029 - -0.1
721,050 + +0.5
721,393 + 11036 mRNA_2668 0.29 -0.4
721,509 + 11036 mRNA_2668 0.38 +0.6
721,556 + 11036 mRNA_2668 0.41 +1.6
721,691 - 11036 mRNA_2668 0.51 +0.3
721,694 + 11036 mRNA_2668 0.51 +0.5
722,091 + 11036 mRNA_2668 0.80 +0.1
722,110 + 11036 mRNA_2668 0.82 +0.5
722,114 - 11036 mRNA_2668 0.82 +0.3
722,139 + 11036 mRNA_2668 0.84 -0.5
722,269 + +0.6
722,273 + -0.9
722,291 + +0.1
722,366 - +0.2
722,399 - -0.9
722,400 - -0.4
722,411 + +1.6
722,456 + -0.4
722,457 + +0.4

Or see this region's nucleotide sequence