Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2706

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11073 and 11074 are separated by 328 nucleotides11074 and 11075 are separated by 445 nucleotides mRNA_2705: 11073 - Hypothetical Protein, at 46,347 to 46,971 11073 mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47,300 to 48,078 11074 mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718 11075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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46,324 + +0.5
46,340 + +0.3
46,342 - +0.8
46,346 - -0.3
46,364 + -0.1
46,481 - 11073 mRNA_2705 0.21 +1.6
46,643 - 11073 mRNA_2705 0.47 +0.6
46,779 + 11073 mRNA_2705 0.69 -0.9
46,795 + 11073 mRNA_2705 0.72 +0.1
46,795 + 11073 mRNA_2705 0.72 +0.7
46,796 - 11073 mRNA_2705 0.72 +0.5
46,802 + 11073 mRNA_2705 0.73 -0.2
46,881 - 11073 mRNA_2705 0.85 -0.3
46,882 - 11073 mRNA_2705 0.86 +0.1
46,893 + 11073 mRNA_2705 0.87 -0.9
46,895 - 11073 mRNA_2705 0.88 +1.0
46,909 + -0.9
46,911 + +0.6
46,948 + +1.0
46,951 + -2.8
46,959 + -0.0
46,965 + -0.4
46,997 + +1.2
46,998 - +1.0
47,002 - +0.1
47,014 + +0.4
47,028 + -0.4
47,051 - -1.1
47,055 - -0.2
47,064 - -0.3
47,065 + +1.4
47,067 + +0.7
47,078 + +0.1
47,093 - +1.4
47,117 - -0.4
47,121 + +2.0
47,174 + +0.6
47,183 - +1.3
47,249 + +1.9
47,260 - -1.0
47,365 - +0.0
47,405 + 11074 mRNA_2706 0.13 -0.7
47,582 + 11074 mRNA_2706 0.36 -1.2
47,717 + 11074 mRNA_2706 0.54 +0.2
47,950 - 11074 mRNA_2706 0.83 +0.3
47,966 + 11074 mRNA_2706 0.85 +1.5
48,263 + +0.1
48,325 - -0.5
48,540 + +1.0
48,700 - -0.9

Or see this region's nucleotide sequence