Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2714

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11082 and 11083 are separated by 541 nucleotides mRNA_2714: 11082 - KOG2477 Uncharacterized conserved protein, at 63,364 to 66,371 11082 mRNA_2715: 11083 - Hypothetical Protein, at 66,913 to 70,114 11083

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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62,378 + +0.2
62,383 - +1.7
62,389 + +1.7
62,390 - -0.7
62,396 - +0.2
62,398 - -0.2
62,399 - +0.5
62,406 + +1.2
62,407 + -0.2
62,410 + -0.8
62,413 + -0.6
62,416 + +2.1
62,422 + -0.3
62,427 + +0.2
62,428 - -0.1
62,432 + -0.6
62,505 - -0.6
62,512 - +0.5
62,515 - +1.0
62,533 + +1.0
62,536 - -0.4
62,546 + +0.4
62,557 + +0.1
62,564 - -0.3
62,565 + +0.4
62,567 - -0.5
62,696 + -0.4
62,699 + +1.4
62,709 + +0.4
62,710 - -0.1
62,711 - -2.5
62,724 + +1.4
62,726 - -0.7
62,731 + -0.4
62,741 + +0.0
62,743 - +1.5
62,752 - -0.3
62,786 - -0.4
62,790 - +2.1
62,790 - +0.8
62,792 - +0.0
62,796 + +0.0
62,807 - -0.0
62,815 - +0.9
62,819 + +0.2
62,831 + +0.6
62,843 + +1.6
62,882 - +1.2
62,882 + -0.3
62,897 - +0.0
62,899 + -0.2
62,919 - +0.0
62,919 + +0.0
62,920 + +1.2
62,922 + +0.5
62,930 - +0.5
62,930 + -1.2
62,934 + -1.1
62,935 + +0.1
63,003 + -0.1
63,109 - +0.4
63,124 - +0.0
63,124 + +0.6
63,137 + +1.4
63,223 - +0.2
63,283 - +0.5
64,443 - 11082 mRNA_2714 0.36 -0.4
64,445 - 11082 mRNA_2714 0.36 +0.4
64,768 - 11082 mRNA_2714 0.47 -0.5
64,801 + 11082 mRNA_2714 0.48 +1.1
64,921 - 11082 mRNA_2714 0.52 +2.3
65,158 - 11082 mRNA_2714 0.60 +0.2
65,192 - 11082 mRNA_2714 0.61 +1.7
65,256 + 11082 mRNA_2714 0.63 -0.4
66,052 - 11082 mRNA_2714 0.89 +2.3
66,444 - +0.6
66,497 - +0.8
66,531 - +1.9
66,643 + -0.4
66,788 - -0.0
66,919 - +0.8
66,979 + +0.7
66,981 - -2.5

Or see this region's nucleotide sequence