Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2728

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11095 and 11096 are separated by 275 nucleotides11096 and 11097 are separated by 459 nucleotides mRNA_2727: 11095 - Hypothetical Protein, at 86,121 to 88,745 11095 mRNA_2728: 11096 - Hypothetical Protein, at 89,021 to 89,898 11096 mRNA_2729: 11097 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 90,358 to 92,251 11097

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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88,550 + +0.4
88,686 + -0.5
88,713 - +0.1
88,858 + -0.0
89,155 + 11096 mRNA_2728 0.15 +0.6
89,421 - 11096 mRNA_2728 0.46 +0.1
89,520 - 11096 mRNA_2728 0.57 -1.3
89,596 + 11096 mRNA_2728 0.65 -0.1
89,608 + 11096 mRNA_2728 0.67 +1.4
89,719 - 11096 mRNA_2728 0.79 -0.6
89,724 + 11096 mRNA_2728 0.80 -0.7
89,725 + 11096 mRNA_2728 0.80 -1.2
89,883 + -0.2
90,017 + -0.4
90,018 + +0.0
90,038 - -0.5
90,045 + +1.3
90,179 + +0.2
90,437 - -0.5
90,487 + +0.9

Or see this region's nucleotide sequence