Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2751

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11118 and 11119 are separated by 361 nucleotides11119 and 11120 are separated by 500 nucleotides mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134,141 to 135,893 11118 mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136,255 to 137,508 11119 mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138,009 to 139,329 11120

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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135,366 - 11118 mRNA_2750 0.70 +1.8
135,367 + 11118 mRNA_2750 0.70 -0.0
135,372 - 11118 mRNA_2750 0.70 +0.9
135,637 + 11118 mRNA_2750 0.85 -0.8
135,653 + 11118 mRNA_2750 0.86 +0.3
135,653 + 11118 mRNA_2750 0.86 +0.2
135,699 - 11118 mRNA_2750 0.89 -0.6
135,699 + 11118 mRNA_2750 0.89 +0.4
135,824 - -0.5
135,923 + +1.4
135,935 + +0.8
135,949 - +0.9
135,951 - -0.4
135,961 - -0.5
135,961 - -0.3
135,964 + +0.1
135,966 + +0.7
135,978 - +1.6
135,999 + +1.4
136,107 - +1.5
136,117 - +0.5
136,151 - -0.5
136,263 - -0.1
136,264 - +1.3
136,272 + +0.5
136,432 + 11119 mRNA_2751 0.14 -0.6
136,439 + 11119 mRNA_2751 0.15 -0.1
136,661 - 11119 mRNA_2751 0.32 -0.8
136,712 - 11119 mRNA_2751 0.36 -1.4
136,725 + 11119 mRNA_2751 0.37 +0.2
136,738 - 11119 mRNA_2751 0.39 +1.6
137,128 - 11119 mRNA_2751 0.70 +0.1
137,393 + -0.4
137,429 - -0.2
137,455 + +1.5
137,554 + +2.0
137,672 - +2.0
137,708 - -1.9
137,716 - -0.3
137,734 + +0.1
137,758 + +0.1
137,883 + +0.2
137,894 - -0.2
138,013 - +0.8
138,021 + +1.0
138,141 - 11120 mRNA_2752 0.10 +0.5
138,190 + 11120 mRNA_2752 0.14 +0.5
138,337 + 11120 mRNA_2752 0.25 -0.1
138,349 + 11120 mRNA_2752 0.26 -0.7
138,463 - 11120 mRNA_2752 0.34 +0.7
138,496 + 11120 mRNA_2752 0.37 +0.3

Or see this region's nucleotide sequence