Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2778

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11146 and 11147 are separated by 129 nucleotides mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188,984 to 191,295 11146 mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191,425 to 193,018 11147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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188,093 + +0.3
188,523 + -0.5
188,527 + -0.8
188,528 - -0.8
188,649 + -0.9
188,797 + -1.2
188,809 + -0.0
188,975 + +0.4
189,217 - 11146 mRNA_2778 0.10 -1.0
189,420 + 11146 mRNA_2778 0.19 -0.1
189,437 - 11146 mRNA_2778 0.20 +2.1
189,551 + 11146 mRNA_2778 0.25 +2.4
189,786 + 11146 mRNA_2778 0.35 -0.2
189,843 - 11146 mRNA_2778 0.37 +1.4
189,974 - 11146 mRNA_2778 0.43 +0.3
189,997 + 11146 mRNA_2778 0.44 +0.5
190,735 + 11146 mRNA_2778 0.76 +0.9
190,941 - 11146 mRNA_2778 0.85 +0.6
190,942 + 11146 mRNA_2778 0.85 +0.6
190,964 - 11146 mRNA_2778 0.86 +2.2
190,970 + 11146 mRNA_2778 0.86 -0.1
191,153 - -0.5
191,153 + -0.8
191,161 + -0.1
191,319 + -0.1
191,320 - -0.9
191,348 - +0.6
191,430 - +0.1
191,441 - -0.3
191,552 + -0.6
191,580 - -0.4
191,763 + 11147 mRNA_2779 0.21 +0.3
191,794 + 11147 mRNA_2779 0.23 +0.6
192,023 - 11147 mRNA_2779 0.38 +1.0
192,129 + 11147 mRNA_2779 0.44 +0.1

Or see this region's nucleotide sequence