Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2839

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11206 and 11207 are separated by 978 nucleotides11207 and 11208 are separated by 301 nucleotides mRNA_2838: 11206 - K02934 RP-L6e, RPL6 large subunit ribosomal protein L6e, at 331,899 to 332,766 11206 mRNA_2839: 11207 - K01427 URE urease, at 333,745 to 337,824 11207 mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338,126 to 339,492 11208

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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333,212 + -0.0
333,323 + +0.9
333,347 + +0.3
333,358 - +0.0
333,362 + +0.0
333,495 - -0.1
333,642 + +0.8
333,671 + -0.2
333,782 + +0.3
333,957 + -0.3
334,218 - 11207 mRNA_2839 0.12 +1.3
334,220 - 11207 mRNA_2839 0.12 +0.3
334,431 + 11207 mRNA_2839 0.17 +0.3
334,542 + 11207 mRNA_2839 0.20 -0.5
334,542 + 11207 mRNA_2839 0.20 -0.1
334,542 - 11207 mRNA_2839 0.20 -0.3
334,685 - 11207 mRNA_2839 0.23 -0.1
334,827 + 11207 mRNA_2839 0.27 -0.9
334,875 - 11207 mRNA_2839 0.28 +0.3
334,982 - 11207 mRNA_2839 0.30 -0.2
335,263 - 11207 mRNA_2839 0.37 +0.6
335,402 - 11207 mRNA_2839 0.41 +0.4
335,524 - 11207 mRNA_2839 0.44 -0.2
335,548 - 11207 mRNA_2839 0.44 +0.2
335,681 - 11207 mRNA_2839 0.47 +0.4
336,001 - 11207 mRNA_2839 0.55 -0.7
336,170 + 11207 mRNA_2839 0.59 +0.7
336,301 + 11207 mRNA_2839 0.63 -0.5
336,677 + 11207 mRNA_2839 0.72 +0.6
336,824 + 11207 mRNA_2839 0.75 -1.6
337,100 - 11207 mRNA_2839 0.82 +0.0
337,360 + 11207 mRNA_2839 0.89 -0.4
337,391 - 11207 mRNA_2839 0.89 +0.1
337,449 + -0.2
337,557 - +0.0
337,571 - -0.1
337,571 - -0.8
337,577 + -0.0
337,596 + -0.6
337,779 - +0.2
337,779 - -1.0
337,860 + -0.0
337,883 + +0.5
337,897 - -0.9
338,013 - -0.3
338,188 + +0.4
338,204 + +1.4
338,214 + -0.4

Or see this region's nucleotide sequence