Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2988

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11355 and 11356 are separated by 246 nucleotides11356 and 11357 are separated by 71 nucleotides mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16,356 to 17,605 11355 mRNA_2988: 11356 - KOG1212 Amidases, at 17,852 to 19,907 11356 mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19,979 to 21,478 11357

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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16,877 + 11355 mRNA_2987 0.42 -0.6
17,017 - 11355 mRNA_2987 0.53 -0.0
17,053 - 11355 mRNA_2987 0.56 +0.1
17,097 + 11355 mRNA_2987 0.59 +0.3
17,100 - 11355 mRNA_2987 0.60 +0.5
17,241 + 11355 mRNA_2987 0.71 +0.9
17,358 - 11355 mRNA_2987 0.80 +0.3
17,483 - -0.1
17,491 - +0.1
17,515 - -0.7
17,546 + +0.1
17,562 + -0.0
17,639 - -0.2
17,641 - +1.0
17,667 + -1.4
17,694 - +2.1
17,832 + -0.2
17,919 - +0.2
17,937 + -0.5
18,027 - -0.5
18,091 + 11356 mRNA_2988 0.12 +0.3
18,144 + 11356 mRNA_2988 0.14 -0.7
18,200 - 11356 mRNA_2988 0.17 +2.0
18,227 + 11356 mRNA_2988 0.18 +1.3
18,253 - 11356 mRNA_2988 0.20 -0.7
18,260 - 11356 mRNA_2988 0.20 +1.2
18,415 - 11356 mRNA_2988 0.27 +0.3
18,576 - 11356 mRNA_2988 0.35 +2.7
18,674 - 11356 mRNA_2988 0.40 +0.2
18,681 - 11356 mRNA_2988 0.40 -0.4
18,720 + 11356 mRNA_2988 0.42 -1.8
18,856 + 11356 mRNA_2988 0.49 -0.4
18,886 + 11356 mRNA_2988 0.50 +0.5
18,917 - 11356 mRNA_2988 0.52 +0.2
19,124 - 11356 mRNA_2988 0.62 +1.4
19,317 + 11356 mRNA_2988 0.71 -1.3
19,338 + 11356 mRNA_2988 0.72 +1.5
19,420 + 11356 mRNA_2988 0.76 +0.4
19,423 + 11356 mRNA_2988 0.76 -0.6
19,574 - 11356 mRNA_2988 0.84 -1.3
19,612 + 11356 mRNA_2988 0.86 +0.7
19,621 + 11356 mRNA_2988 0.86 -1.7
19,747 + -0.8
19,778 - -1.2
19,780 + +0.3
19,860 - +0.1
19,900 + -1.7
19,924 + -0.4
19,981 - +1.1
20,043 + -0.1
20,073 + -2.2
20,187 - 11357 mRNA_2989 0.14 -0.9
20,491 - 11357 mRNA_2989 0.34 +0.2
20,755 - 11357 mRNA_2989 0.52 -1.0
20,760 + 11357 mRNA_2989 0.52 -0.7
20,777 - 11357 mRNA_2989 0.53 +0.1
20,859 - 11357 mRNA_2989 0.59 +0.9
20,903 + 11357 mRNA_2989 0.62 -0.4

Or see this region's nucleotide sequence