Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3097

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11464 and 11465 are separated by 231 nucleotides11465 and 11466 are separated by 198 nucleotides mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310,272 to 311,367 11464 mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311,599 to 312,739 11465 mRNA_3098: 11466 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 312,938 to 315,396 11466

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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310,692 + 11464 mRNA_3096 0.38 +0.3
310,693 + 11464 mRNA_3096 0.38 +0.0
310,851 + 11464 mRNA_3096 0.53 +1.0
310,993 - 11464 mRNA_3096 0.66 -0.7
311,068 - 11464 mRNA_3096 0.73 +1.4
311,120 + 11464 mRNA_3096 0.77 +0.1
311,310 + +1.4
311,321 - -0.3
311,400 - +0.2
311,405 - +0.5
311,545 - +0.1
311,558 - -0.7
311,564 - +0.6
311,564 - -0.3
311,565 - +1.4
311,568 - -0.1
311,577 + -0.4
311,583 + -1.1
311,589 + -0.3
311,592 + +0.6
311,670 - -1.5
311,704 + -0.2
311,717 + 11465 mRNA_3097 0.10 -0.6
311,725 + 11465 mRNA_3097 0.11 +0.7
311,758 + 11465 mRNA_3097 0.14 +0.5
311,850 - 11465 mRNA_3097 0.22 -0.1
311,869 - 11465 mRNA_3097 0.24 -0.7
312,026 - 11465 mRNA_3097 0.37 -0.6
312,032 + 11465 mRNA_3097 0.38 -1.2
312,136 + 11465 mRNA_3097 0.47 +0.7
312,233 + 11465 mRNA_3097 0.56 -0.8
312,462 + 11465 mRNA_3097 0.76 -1.5
312,462 + 11465 mRNA_3097 0.76 +1.3
312,469 + 11465 mRNA_3097 0.76 +0.2
312,472 - 11465 mRNA_3097 0.77 +0.2
312,597 - 11465 mRNA_3097 0.87 -0.3
312,803 + +1.9
312,910 + -1.0
312,913 + -0.9
312,935 + -0.2
312,980 - -0.2
313,058 + +1.6
313,212 - 11466 mRNA_3098 0.11 -0.4
313,214 + 11466 mRNA_3098 0.11 +1.5
313,337 + 11466 mRNA_3098 0.16 -0.2
313,452 + 11466 mRNA_3098 0.21 -0.7
313,466 + 11466 mRNA_3098 0.21 +0.1
313,491 + 11466 mRNA_3098 0.22 +1.0
313,680 + 11466 mRNA_3098 0.30 +0.6

Or see this region's nucleotide sequence