Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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12 + -0.6
12 + +0.4
15 + +1.1
16 + -0.8
18 + +0.8
22 + +1.0
25 + +0.1
57 - +0.4
61 - -1.1
62 + +0.1
62 + +0.1
66 + +1.2
72 + -1.2
72 + +0.3
72 + -0.1
75 + +0.7
78 - +0.9
105 + +1.3
110 - -0.8
114 + +0.2
115 + +0.5
118 + -0.4
122 + +0.1
122 - -0.0
124 + +0.5
135 + +0.7
147 + -0.1
157 + +0.7
161 + +0.3
168 + +1.5
174 + -0.4
177 - -0.9
228 + +2.3
247 + +0.5
252 - +1.0
253 - +0.4
255 + -1.0
258 + +0.2
264 - +0.0
269 + +0.1
269 - +0.2
274 + +0.4
275 - +0.1
277 + -1.3
280 + +1.8
280 + +0.5
283 - +1.1
285 - -0.1
287 + +0.2
287 + -0.1
288 + -0.1
292 - +1.9
293 + +0.1
298 + +0.2
305 - -0.2
314 + +0.2
320 + -0.4
368 + +0.0
370 - +0.1
372 + +0.3
382 + +1.9
384 + +0.4
391 + +0.8
391 - -0.3
397 + +0.7
397 - -0.4
402 + -0.2
405 + +0.4
423 - +0.5
430 + +0.2
440 + +0.5
446 + +1.7
470 + -0.3
524 + +0.6
532 + -1.7
545 - +0.8
557 + +0.3
569 + +0.3
570 - -1.3
583 + -0.5
584 + +0.6
603 - -0.3
603 + +0.7
634 - 11537 mRNA_3169 0.11 -0.1
636 + 11537 mRNA_3169 0.11 +1.2
646 + 11537 mRNA_3169 0.12 +0.3
661 + 11537 mRNA_3169 0.13 +0.2
667 + 11537 mRNA_3169 0.14 +0.4
698 + 11537 mRNA_3169 0.17 +0.2
704 - 11537 mRNA_3169 0.18 +0.3
705 - 11537 mRNA_3169 0.18 -0.6
721 - 11537 mRNA_3169 0.19 +0.2
725 + 11537 mRNA_3169 0.20 +1.5
738 - 11537 mRNA_3169 0.21 +0.9
849 + 11537 mRNA_3169 0.32 +0.3
871 + 11537 mRNA_3169 0.34 -2.2
883 + 11537 mRNA_3169 0.35 +0.2
894 + 11537 mRNA_3169 0.37 +1.0
895 + 11537 mRNA_3169 0.37 -0.1
922 + 11537 mRNA_3169 0.39 +0.3
965 - 11537 mRNA_3169 0.44 +0.4
1,012 - 11537 mRNA_3169 0.48 -0.4
1,026 + 11537 mRNA_3169 0.50 -0.5
1,026 + 11537 mRNA_3169 0.50 -0.1
1,105 + 11537 mRNA_3169 0.58 -1.5
1,123 + 11537 mRNA_3169 0.60 -0.2
1,141 + 11537 mRNA_3169 0.61 +1.1
1,142 + 11537 mRNA_3169 0.61 +0.7
1,165 + 11537 mRNA_3169 0.64 +0.8
1,174 - 11537 mRNA_3169 0.65 +0.6
1,174 + 11537 mRNA_3169 0.65 -0.8
1,259 + 11537 mRNA_3169 0.73 -0.5
1,265 + 11537 mRNA_3169 0.74 -0.2
1,268 + 11537 mRNA_3169 0.74 +0.5
1,269 - 11537 mRNA_3169 0.74 +0.2
1,288 - 11537 mRNA_3169 0.76 -0.4
1,297 + 11537 mRNA_3169 0.77 -1.7
1,303 - 11537 mRNA_3169 0.78 +0.0
1,399 + 11537 mRNA_3169 0.87 +0.0
1,412 - 11537 mRNA_3169 0.88 -0.0
1,419 - 11537 mRNA_3169 0.89 -0.0
1,423 - 11537 mRNA_3169 0.90 -4.0
1,429 - -1.2
1,453 + +0.2
1,459 + -0.0
1,459 + -0.3
1,460 - +0.2
1,461 + -0.7
1,462 + +1.3
1,467 + -0.4
1,470 - -0.1
1,474 - +0.0
1,485 + -1.1
1,520 + -0.2
1,523 + +1.4
1,531 - -0.5
1,537 + +0.4
1,541 + +1.0
1,562 + +0.4
1,567 + +0.1
1,572 + +0.4
1,582 - -1.6
1,584 - +0.3
1,589 + -1.3
1,596 - +0.5
1,601 - -0.6
1,602 + -1.0
1,605 + -2.0
1,609 + -1.3
1,616 + -0.1
1,636 + -0.6
1,654 + -0.5
1,656 - +0.7
1,666 + -0.0
1,675 - -1.1
1,682 - -1.6
1,697 - -1.1
1,709 + +0.6
1,709 - +0.0
1,711 + +0.1
1,718 - -0.1
1,719 + +0.2
1,722 - +0.3
1,723 + -0.2
1,725 - -0.1
1,725 - +1.2
1,727 + +0.6
1,730 + -1.5
1,731 + +0.1
1,732 + +0.0
1,732 + +0.7
1,734 + +1.0
1,734 + -0.2
1,734 + +0.6
1,739 - -0.3
1,740 + -0.1
1,744 - +0.4
1,747 + -0.5
1,749 + -1.2
1,759 + -0.6
1,759 + -1.1
1,759 + +0.5
1,761 + +0.3
1,763 + -0.1
1,765 + -0.2
1,767 + +0.2
1,769 + +0.2
1,772 + -0.9
1,772 + +0.6
1,774 + -0.5
1,774 + +1.2
1,775 + -0.9
1,776 - -0.2
1,776 + -0.2
1,777 + -0.6
1,778 + +0.8
1,778 - -0.4
1,781 - +1.0
1,783 - -0.0
1,783 - +1.2
1,783 - +1.6
1,783 - +0.6
1,784 + -1.3
1,789 + +0.4
1,789 - -0.4
1,791 + -0.2
1,792 + -0.2
1,793 + +0.8
1,795 + -0.9
1,796 + -1.0
1,796 - +0.0
1,798 + +1.1
1,800 + +0.3
1,801 + -0.5
1,805 + -0.2
1,805 + -0.9
1,807 + +0.1
1,813 - -0.4
1,814 + -0.8
1,814 + -0.1
1,818 - +0.8
1,851 - -0.4
1,874 + +0.1
1,881 - +0.3
1,885 - +0.1
1,891 - -2.7
1,896 - -0.4
1,912 + +0.7
1,912 + -0.6
1,914 - +0.1
1,916 - -0.4
1,917 - -0.7
1,919 + -0.9
1,922 - +1.4
1,923 - -0.3
1,934 - -0.8
1,935 + -0.5
1,938 - -0.4
1,938 - -1.1
1,940 - -0.6
1,941 + -0.2
1,941 + -0.5
1,942 + -1.2
1,943 - -1.0
1,944 + -0.1
1,944 - -0.7
1,945 - -0.0
1,945 + -0.1
1,946 - -0.8
1,947 + +0.5
1,960 - -0.8
1,968 + +1.5
1,980 + -1.4
2,015 + +0.5
2,067 - -1.2
2,081 - -0.9
2,091 + -0.2
2,220 + -1.1
2,229 - +0.4
2,235 - -1.0
2,237 - -1.0
2,242 + +1.2
2,242 - -0.4
2,245 - +0.2
2,248 - -0.2
2,251 + -1.1
2,254 - -0.6
2,261 + -1.2
2,262 - -0.9
2,266 + +0.8
2,268 + +0.1
2,400 + 11538 mRNA_3170 0.21 +0.0
2,401 - 11538 mRNA_3170 0.21 -1.3
2,404 + 11538 mRNA_3170 0.22 -2.0
2,414 + 11538 mRNA_3170 0.23 +1.0
2,420 - 11538 mRNA_3170 0.23 +0.4
2,439 + 11538 mRNA_3170 0.25 -1.2
2,446 + 11538 mRNA_3170 0.26 +0.9
2,470 - 11538 mRNA_3170 0.28 -1.0
2,516 - 11538 mRNA_3170 0.32 -1.3

Or see this region's nucleotide sequence