Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3173

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11540 and 11541 are separated by 249 nucleotides11541 and 11542 are separated by 481 nucleotides mRNA_3172: 11540 - Hypothetical Protein, at 6,329 to 7,697 11540 mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7,947 to 10,272 11541 mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10,754 to 11,960 11542

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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6,998 - 11540 mRNA_3172 0.49 -1.2
7,000 - 11540 mRNA_3172 0.49 +0.2
7,011 + 11540 mRNA_3172 0.50 +0.1
7,286 + 11540 mRNA_3172 0.70 +0.6
7,389 + 11540 mRNA_3172 0.77 -0.0
7,459 + 11540 mRNA_3172 0.83 -0.5
7,565 + +0.5
7,619 + -1.6
7,740 - +0.3
7,759 + -0.0
7,902 - -0.6
7,928 + -0.0
10,332 + +1.0
10,621 - +0.5
10,628 + +0.4
10,636 - +0.2
10,640 + -0.3
10,644 + +0.8
10,647 - -0.0
10,656 + +2.3

Or see this region's nucleotide sequence