Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3224

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11591 and 11592 are separated by 390 nucleotides mRNA_3223: 11591 - Hypothetical Protein, at 136,995 to 137,729 11591 mRNA_3224: 11592 - BLAST UvdE-domain-containing protein [Gloeophyllum trab..., at 138,120 to 138,730 11592

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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137,122 - 11591 mRNA_3223 0.17 +0.2
137,430 - 11591 mRNA_3223 0.59 +0.0
137,544 - 11591 mRNA_3223 0.75 +0.1
137,845 + +0.9
138,318 + 11592 mRNA_3224 0.32 -0.1
138,685 + -0.2
138,698 - -0.3
138,702 + -0.7
138,937 + +0.0
139,148 - -0.4
139,227 - +0.5
139,532 - -0.6
139,543 + +0.4
139,641 - -0.0
139,693 + +0.7

Or see this region's nucleotide sequence