Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3234

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11601 and 11602 are separated by 181 nucleotides mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161,469 to 163,797 11601 mRNA_3234: 11602 - Hypothetical Protein, at 163,979 to 166,240 11602

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
163,328 - 11601 mRNA_3233 0.80 +0.6
163,399 + 11601 mRNA_3233 0.83 -0.6
163,460 - 11601 mRNA_3233 0.85 +1.6
163,620 - -0.5
163,638 - -0.2
163,643 + -0.6
163,757 + -0.2
163,950 - +0.9
163,952 + +0.1
164,090 - +1.0
164,207 - 11602 mRNA_3234 0.10 +1.2
164,330 - 11602 mRNA_3234 0.16 +0.4
164,520 + 11602 mRNA_3234 0.24 -1.0
164,875 - 11602 mRNA_3234 0.40 -0.1
165,135 + 11602 mRNA_3234 0.51 +1.0
165,229 + 11602 mRNA_3234 0.55 -0.1
165,758 - 11602 mRNA_3234 0.79 +2.3
166,174 + -0.9
166,589 - -0.5
166,694 + +1.1
166,701 - -0.1
166,752 - -0.3
166,897 - +0.7
166,994 - -0.2
167,137 + -1.5

Or see this region's nucleotide sequence