Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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200,108 + 11612 mRNA_3244 0.62 -0.6
200,206 + 11612 mRNA_3244 0.69 +0.8
200,479 + +1.2
200,500 - -0.2
200,515 - +0.8
200,553 - +0.1
200,597 + -0.8
201,006 - -0.9
201,130 - -0.8
202,039 + 11613 mRNA_3245 0.33 +0.6
202,325 + 11613 mRNA_3245 0.42 -0.7
202,630 + 11613 mRNA_3245 0.53 -1.2
202,767 - 11613 mRNA_3245 0.57 -1.5
203,376 - 11613 mRNA_3245 0.78 +1.8
203,509 + 11613 mRNA_3245 0.82 -0.2
203,657 - 11613 mRNA_3245 0.87 -0.2
203,661 + 11613 mRNA_3245 0.87 -0.7
203,790 - -0.1
203,799 - -0.4
203,946 + +0.1
203,947 + -2.2
204,103 - +0.9
204,225 - +0.2
204,225 - -0.0
204,225 - +0.2
204,234 - +0.1
204,235 - +0.2
204,238 + -0.9
204,250 - +1.8
204,251 + +0.0
204,270 + +0.4
204,278 + -0.3
204,280 + -0.7
204,286 - +0.7
204,290 - +0.6
204,291 - -0.8
204,298 + -0.3
204,314 + +1.3
204,335 - +0.6
204,357 - +0.8
204,383 - +0.2
204,393 - +0.2
204,412 + +1.0
204,437 - -1.0
204,443 - +0.1
204,445 + -0.1
204,447 - +1.3
204,448 + -0.3
204,448 - +0.1
204,454 + +1.4
204,454 + +0.1
204,455 - -0.5
204,463 + +0.1
204,468 - -0.2
204,473 + +0.5
204,479 + +0.6
204,484 - +0.0
204,491 - +0.2
204,511 - -0.4
204,528 - +0.1
204,534 - +2.1
204,547 - -0.9
204,557 + -1.8
204,639 + -0.4
204,647 + +0.0
204,652 - +2.3
204,654 + +1.3
204,664 - +0.3
204,665 + -1.0
204,678 + +1.0
204,695 + +2.0
204,699 + +0.2
204,724 - +0.2
204,727 + -1.0
204,801 - +2.2
204,811 + -0.4
204,826 + -2.3
204,957 - +0.6

Or see this region's nucleotide sequence