Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3250

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11617 and 11618 are separated by 155 nucleotides11618 and 11619 are separated by 246 nucleotides mRNA_3249: 11617 - Hypothetical Protein, at 211,752 to 212,300 11617 mRNA_3250: 11618 - K00415 QCR2, UQCRC2 ubiquinol-cytochrome c reductase core subunit 2, at 212,456 to 214,047 11618 mRNA_3251: 11619 - K19986 EXOC8, SEC84 exocyst complex component 8, at 214,294 to 217,210 11619

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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211,621 - +0.3
211,789 - -0.0
211,836 + 11617 mRNA_3249 0.15 +0.5
211,920 - 11617 mRNA_3249 0.31 +0.0
211,925 - 11617 mRNA_3249 0.32 +1.3
211,930 - 11617 mRNA_3249 0.32 +1.0
211,962 + 11617 mRNA_3249 0.38 +0.3
212,064 + 11617 mRNA_3249 0.57 -1.2
212,120 + 11617 mRNA_3249 0.67 +2.4
212,233 - 11617 mRNA_3249 0.88 +2.0
212,242 - 11617 mRNA_3249 0.89 +0.4
212,261 - -1.0
212,263 - +0.3
212,267 + -0.8
212,380 + +0.1
212,387 + +0.9
212,387 + +0.4
212,390 - -1.1
212,438 + -0.4
212,441 + +0.7
214,069 - +1.1
214,089 + +1.1
214,194 - +0.7
214,213 - -0.1
214,219 + +1.2
214,221 - +0.7
214,244 + -0.2
214,354 - +0.0
214,671 - 11619 mRNA_3251 0.13 +0.1

Or see this region's nucleotide sequence