Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3307

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11674 and 11675 are separated by 249 nucleotides11675 and 11676 are separated by 786 nucleotides mRNA_3306: 11674 - KOG0845 Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116), at 353,822 to 355,437 11674 mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355,687 to 356,880 11675 mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357,667 to 359,935 11676

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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355,462 + +0.8
355,602 - +0.7
355,776 + +2.7
355,894 + 11675 mRNA_3307 0.17 +3.0
356,031 + 11675 mRNA_3307 0.29 +2.7
356,031 + 11675 mRNA_3307 0.29 +2.3
356,052 + 11675 mRNA_3307 0.31 +1.8
356,310 + 11675 mRNA_3307 0.52 +2.0
356,615 - 11675 mRNA_3307 0.78 +0.9
356,621 - 11675 mRNA_3307 0.78 +2.1
356,623 - 11675 mRNA_3307 0.78 +2.5
356,629 - 11675 mRNA_3307 0.79 +3.5
356,755 - 11675 mRNA_3307 0.89 +2.4
356,888 - +3.7
356,897 - +3.0
356,904 - +0.4
356,914 + +2.1
356,915 - +3.6
357,040 + +3.0
357,044 - +1.5
357,074 + -0.7
357,192 + +0.1
357,196 - +0.7
357,204 + +3.0
357,343 - +0.9
357,790 + +0.3

Or see this region's nucleotide sequence