Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3309

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11676 and 11677 are separated by 603 nucleotides mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357,667 to 359,935 11676 mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360,539 to 362,421 11677

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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359,848 + +0.8
359,853 - +0.1
359,857 - +0.2
360,014 - -1.0
360,017 + -0.2
360,057 - -0.6
360,103 + -0.2
360,115 - +0.2
360,117 - +0.5
360,132 + +0.0
360,136 - -0.5
360,136 + -1.2
360,136 - +0.9
360,140 - +0.2
360,143 - -0.6
360,147 + -0.3
360,153 + -0.6
360,164 + -0.8
360,165 - -0.1
360,169 - -0.8
360,170 - +1.1
360,182 + +0.1
360,182 + +0.2
360,197 + +0.5
360,203 - -0.3
360,217 + -0.7
360,356 + -0.3
360,370 - -0.4
360,371 + -1.9
360,378 + -0.6
360,395 - -0.6
360,398 + +1.1
360,413 + +1.0
360,426 - +0.2
360,426 - -0.6
360,427 - -0.5
360,428 + -1.1
360,428 - +1.5
360,432 - +0.2
360,433 - -0.1
360,434 - +0.5
360,437 + +0.6
360,437 - -2.6
360,437 - -1.2
360,440 + +0.7
360,446 + +0.7
360,447 - +0.9
360,448 - +0.2
360,454 - +0.9
360,461 + +1.0
360,463 - +1.3
360,466 - -0.1
360,471 + +0.2
360,471 + -4.3
360,475 - +0.1
360,486 + +0.2
360,489 + +0.9
360,507 + -1.1
360,563 - -1.1
360,608 - -0.1
360,609 - +0.1
360,612 - -0.6
360,637 - +2.3
360,751 - 11677 mRNA_3309 0.11 -1.1
360,763 + 11677 mRNA_3309 0.12 +0.1
360,911 + 11677 mRNA_3309 0.20 +0.8
361,230 + 11677 mRNA_3309 0.37 +2.2
361,607 + 11677 mRNA_3309 0.57 +0.8
361,786 - 11677 mRNA_3309 0.66 -0.8
361,915 + 11677 mRNA_3309 0.73 -1.2
361,939 - 11677 mRNA_3309 0.74 +0.2
362,074 - 11677 mRNA_3309 0.82 -0.0
362,206 + 11677 mRNA_3309 0.89 +0.3
362,353 + +0.5
362,503 - -0.1
362,507 + +0.9
362,659 - +1.7
362,666 + +1.6
362,999 + +0.2
363,130 - -2.0
363,137 + -0.8
363,418 - +0.3
363,420 - +0.2

Or see this region's nucleotide sequence