Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3342

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11709 and 11710 are separated by 578 nucleotides mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428,327 to 429,727 11709 mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430,306 to 432,208 11710

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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429,443 + 11709 mRNA_3341 0.80 +0.5
429,595 + -0.6
429,635 - +2.0
429,739 - +0.1
429,746 + -1.0
429,750 + -0.7
429,753 - -1.0
429,838 + +0.1
429,954 - +0.7
430,081 + -0.1
430,093 - +0.3
430,123 + +1.5
430,202 - -0.2
430,243 + -0.1
430,703 - 11710 mRNA_3342 0.21 +0.1
430,704 + 11710 mRNA_3342 0.21 +0.5
430,710 - 11710 mRNA_3342 0.21 -0.2
431,150 - 11710 mRNA_3342 0.44 +1.0
431,745 + 11710 mRNA_3342 0.76 -0.0
431,762 + 11710 mRNA_3342 0.77 +0.5
431,882 + 11710 mRNA_3342 0.83 +0.4
432,052 + +1.0
432,200 + +0.6
432,209 + +0.8
432,352 + -0.4
432,359 - -0.3
432,367 + -0.3
432,415 - +0.2
432,419 - -0.6
432,420 - +0.5
432,424 - +0.7
432,427 - -1.0
432,434 - +0.1

Or see this region's nucleotide sequence