Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3529

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11896 and 11897 are separated by 445 nucleotides11897 and 11898 are separated by 614 nucleotides mRNA_3528: 11896 - Hypothetical Protein, at 316,787 to 317,613 11896 mRNA_3529: 11897 - Hypothetical Protein, at 318,059 to 319,264 11897 mRNA_3530: 11898 - K14007 SEC24 protein transport protein SEC24, at 319,879 to 322,720 11898

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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317,420 - 11896 mRNA_3528 0.77 -0.1
317,567 + -0.2
317,582 - +1.2
317,705 + +1.5
317,882 + -0.0
317,926 - -0.9
318,042 + +0.5
318,196 + 11897 mRNA_3529 0.11 +2.6
318,207 - 11897 mRNA_3529 0.12 +0.1
318,312 - 11897 mRNA_3529 0.21 -0.1
318,471 - 11897 mRNA_3529 0.34 +1.0
318,514 - 11897 mRNA_3529 0.38 +0.1
318,594 - 11897 mRNA_3529 0.44 +0.8
318,646 - 11897 mRNA_3529 0.49 -0.4
318,654 + 11897 mRNA_3529 0.49 +1.4
318,715 + 11897 mRNA_3529 0.54 +0.1
318,773 - 11897 mRNA_3529 0.59 -0.2
318,892 - 11897 mRNA_3529 0.69 +0.4
318,900 + 11897 mRNA_3529 0.70 -1.4
318,970 + 11897 mRNA_3529 0.76 +2.1
319,000 + 11897 mRNA_3529 0.78 -0.5
319,041 + 11897 mRNA_3529 0.81 +0.1
319,076 + 11897 mRNA_3529 0.84 +0.1
319,201 - -1.5
319,216 + -0.0
319,224 - +0.2
319,308 + +1.0
319,352 + +0.4
319,377 + -0.1
319,519 - +1.8
319,533 + +1.3
319,534 - -0.9
319,536 - +1.7
319,537 + +0.4
319,541 - -0.8
319,546 + +0.7
319,728 - +0.8
319,730 + +2.0
319,864 - -2.0
319,875 + -0.0

Or see this region's nucleotide sequence