Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3674

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12041 and 12042 are separated by 535 nucleotides12042 and 12043 are separated by 477 nucleotides mRNA_3673: 12041 - K11251 H2A histone H2A, at 313,222 to 314,004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836 12042 mRNA_3675: 12043 - K11251 H2A histone H2A, at 317,314 to 317,987 12043

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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313,638 + 12041 mRNA_3673 0.53 -0.6
313,642 - 12041 mRNA_3673 0.54 +0.6
313,906 - 12041 mRNA_3673 0.87 +0.1
313,919 + 12041 mRNA_3673 0.89 +0.0
314,075 + -0.5
314,202 - +0.1
314,206 + +1.1
314,210 + +1.7
314,228 - +0.2
314,229 + -0.6
314,234 + -0.4
314,235 - -2.4
314,271 - +0.5
314,272 + +1.4
314,278 + +0.2
314,278 + +0.7
314,278 - +1.0
314,279 + +0.3
314,282 - +0.2
314,283 + +2.3
314,285 + +2.6
314,288 - +1.1
314,289 + -0.8
314,297 - +0.8
314,311 - -0.1
314,311 - -0.3
314,312 + -0.6
314,344 + -1.0
314,345 + -0.2
314,351 - +0.4
314,351 - +2.2
314,359 + +1.4
314,376 + +1.3
314,377 + +1.6
314,400 + +0.1
314,465 + +1.3
314,515 + -0.1
314,518 + +0.1
314,522 + -0.5
314,533 - -2.1
314,546 + +1.4
314,675 - +0.4
314,676 + -0.8
314,825 + 12042 mRNA_3674 0.12 -2.7
314,925 + 12042 mRNA_3674 0.17 +0.6
314,966 + 12042 mRNA_3674 0.19 +0.5
315,270 + 12042 mRNA_3674 0.32 +0.6
315,536 + 12042 mRNA_3674 0.43 +1.3
316,536 + 12042 mRNA_3674 0.87 +0.3
316,969 - -1.4
316,969 - -0.6
317,135 - +1.2
317,153 + +1.4
317,391 - 12043 mRNA_3675 0.11 +0.4
317,592 + 12043 mRNA_3675 0.41 +0.4
317,597 + 12043 mRNA_3675 0.42 -0.4
317,611 + 12043 mRNA_3675 0.44 +0.8

Or see this region's nucleotide sequence