Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3696

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12063 and 12064 are separated by 358 nucleotides12064 and 12065 are separated by 274 nucleotides mRNA_3695: 12063 - KOG1730 Thioredoxin-like protein, at 379,073 to 379,916 12063 mRNA_3696: 12064 - SUPERFAMILY--SSF53335, at 380,275 to 383,085 12064 mRNA_3697: 12065 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 383,360 to 385,326 12065

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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379,516 + 12063 mRNA_3695 0.52 -0.1
379,681 + 12063 mRNA_3695 0.72 -0.1
379,710 + 12063 mRNA_3695 0.75 +0.5
379,723 + 12063 mRNA_3695 0.77 -0.4
379,823 + 12063 mRNA_3695 0.89 -0.0
379,978 + +0.2
379,981 - +1.4
380,000 + +0.4
380,002 + +0.4
380,009 + +0.4
380,021 + -0.3
380,139 - -0.7
380,165 - -0.0
380,286 + +1.7
380,401 - +1.3
380,411 + -0.0
380,537 - +0.4
380,553 + +0.9
380,705 - 12064 mRNA_3696 0.15 +0.0
381,032 - 12064 mRNA_3696 0.27 +0.7
381,320 + 12064 mRNA_3696 0.37 +0.3
382,045 - 12064 mRNA_3696 0.63 +0.1
382,050 - 12064 mRNA_3696 0.63 +0.6
382,627 + 12064 mRNA_3696 0.84 -0.4
383,243 + +0.1
383,497 - -3.4
383,516 + -4.6

Or see this region's nucleotide sequence