Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3758

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12125 and 12126 are separated by 849 nucleotides12126 and 12127 are separated by 86 nucleotides mRNA_3757: 12125 - Hypothetical Protein, at 514,071 to 514,868 12125 mRNA_3758: 12126 - HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208, at 515,718 to 518,534 12126 mRNA_3759: 12127 - Hypothetical Protein, at 518,621 to 520,492 12127

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
514,834 + -0.9
515,000 - +0.5
515,024 + -0.2
515,404 + +1.2
515,415 + +1.9
515,540 + -0.9
515,599 - +2.0
515,785 + +0.1
516,367 + 12126 mRNA_3758 0.23 +0.0
516,429 + 12126 mRNA_3758 0.25 +1.5
516,556 - 12126 mRNA_3758 0.30 -0.3
516,855 + 12126 mRNA_3758 0.40 +1.2
516,871 - 12126 mRNA_3758 0.41 +0.6
516,871 - 12126 mRNA_3758 0.41 +0.3
516,982 - 12126 mRNA_3758 0.45 -0.2
517,301 - 12126 mRNA_3758 0.56 -0.3
517,336 + 12126 mRNA_3758 0.57 -0.4
517,679 + 12126 mRNA_3758 0.70 +0.3
517,864 - 12126 mRNA_3758 0.76 +0.5
517,868 - 12126 mRNA_3758 0.76 +1.4
517,879 + 12126 mRNA_3758 0.77 -0.1
517,981 + 12126 mRNA_3758 0.80 -0.1
517,987 - 12126 mRNA_3758 0.81 +0.8
518,191 + 12126 mRNA_3758 0.88 +0.6
518,314 - -0.2
518,461 - +1.1
518,463 - -0.6
518,468 + -0.1
518,591 + +0.3
518,614 - +0.6
518,618 + -0.8
518,622 + +0.1
518,632 - +1.1
518,632 - +0.4
518,653 - +0.2
518,772 + +0.3
518,790 + +0.3
518,818 - 12127 mRNA_3759 0.11 +0.6
518,819 + 12127 mRNA_3759 0.11 +1.3
518,821 - 12127 mRNA_3759 0.11 +0.0
518,826 + 12127 mRNA_3759 0.11 -0.2
518,826 + 12127 mRNA_3759 0.11 -0.3
519,024 - 12127 mRNA_3759 0.22 +1.3
519,084 + 12127 mRNA_3759 0.25 +0.2
519,085 + 12127 mRNA_3759 0.25 +0.3
519,192 + 12127 mRNA_3759 0.31 -1.5
519,247 + 12127 mRNA_3759 0.33 +0.4

Or see this region's nucleotide sequence