Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3821

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12188 and 12189 are separated by 236 nucleotides12189 and 12190 are separated by 122 nucleotides mRNA_3820: 12188 - K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1, at 660,836 to 665,185 12188 mRNA_3821: 12189 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 665,422 to 669,105 12189 mRNA_3822: 12190 - HMMPfam-Protein of unknown function (DUF2781)-PF10914,PIRSF--PIRSF031032, at 669,228 to 670,038 12190

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
665,064 - +2.8
665,067 - +0.2
665,193 - -0.1
665,268 - +0.3
665,321 + +0.1
665,329 + -0.8
665,680 - +0.1
665,829 + 12189 mRNA_3821 0.11 -0.1
665,956 + 12189 mRNA_3821 0.14 -0.2
666,082 - 12189 mRNA_3821 0.18 +0.9
666,148 + 12189 mRNA_3821 0.20 +0.5
666,539 + 12189 mRNA_3821 0.30 -0.2
666,608 + 12189 mRNA_3821 0.32 -0.2
667,153 - 12189 mRNA_3821 0.47 -0.5
667,388 + 12189 mRNA_3821 0.53 +0.0
667,570 + 12189 mRNA_3821 0.58 -1.5
667,906 + 12189 mRNA_3821 0.67 -2.0
668,372 + 12189 mRNA_3821 0.80 -0.3
668,374 + 12189 mRNA_3821 0.80 +1.5
668,474 + 12189 mRNA_3821 0.83 -0.7
668,554 - 12189 mRNA_3821 0.85 -1.0
668,713 + 12189 mRNA_3821 0.89 -0.3
668,863 + -0.7
668,988 - +1.4
669,009 - +0.2
669,050 + -0.5
669,176 + -0.1
669,178 - +0.4
669,187 - -0.8
669,188 - +0.5
669,197 - -0.8
669,289 + -1.3
669,945 + 12190 mRNA_3822 0.88 +0.0
669,993 - +0.3

Or see this region's nucleotide sequence