Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3826

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12193 and 12194 are separated by 598 nucleotides mRNA_3825: 12193 - K02941 RP-LP0, RPLP0 large subunit ribosomal protein LP0, at 671,427 to 672,513 12193 mRNA_3826: 12194 - Hypothetical Protein, at 673,112 to 675,577 12194

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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672,954 - -0.8
672,954 - +0.8
672,968 - +0.3
672,968 - +0.0
672,968 + -0.5
672,971 - -0.6
672,975 + -2.5
672,978 + +0.9
672,982 + -1.2
672,985 + -0.2
672,986 - +0.3
672,986 - +0.1
672,990 + -1.5
672,993 - +0.8
672,995 + +1.2
673,008 + -0.8
673,009 + -0.1
673,010 + -0.2
673,011 + +0.4
673,021 + +1.6
673,022 + -0.9
673,062 + +0.4
673,178 - -0.5
673,187 - -0.4
673,320 + +1.9
673,486 + 12194 mRNA_3826 0.15 +1.0
673,645 + 12194 mRNA_3826 0.22 -0.1
673,656 + 12194 mRNA_3826 0.22 -0.5
674,191 + 12194 mRNA_3826 0.44 +0.3
674,405 + 12194 mRNA_3826 0.52 -0.5
675,218 - 12194 mRNA_3826 0.85 -1.9
675,331 + +1.0
675,498 + +2.6
675,513 + +1.5
675,517 + +0.2
675,527 - +0.2
675,553 + -0.1
675,614 - -0.8
675,617 - +1.0
675,633 - +0.2
675,647 - +0.0
675,648 + +0.2
675,651 - +0.3
675,656 - -0.6
675,663 + -0.3
675,667 - -0.4
675,673 - +0.3
675,681 - -2.3
675,683 + +0.3
675,690 - -0.0
675,693 - -0.9
675,694 - -0.1
675,695 + +0.7
675,696 - +0.6
675,696 + -1.4
675,697 - +0.6
675,703 + +0.6
675,703 + +1.2
675,706 + +0.1
675,711 - +0.2
675,713 - -0.3
675,838 - -1.3
675,856 - -0.8
675,862 - +1.4
675,862 - -1.1
675,863 - +2.8
675,863 - -1.4
675,865 + -0.4
675,868 - -0.8
675,870 + +0.9
675,872 + +0.7
675,875 - -0.2
675,885 - +0.1
675,886 + +1.5
675,891 + +0.0
675,901 + +1.2
675,904 + -0.7
675,905 + +0.0
675,979 + +0.1
675,993 - -1.4
676,015 + +0.2
676,035 - -0.3
676,076 + +0.2
676,156 + +0.6
676,183 + -0.2
676,187 + -0.0
676,484 + +0.2

Or see this region's nucleotide sequence