Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3846

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12213 and 12214 are separated by 988 nucleotides mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842 12214

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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727,698 + +0.4
727,699 - -2.8
727,711 + -0.7
727,712 - -0.1
727,827 + -1.6
727,842 + +0.4
727,992 - +0.3
728,001 + -0.1
728,007 + +1.4
728,022 - -2.0
728,030 + +0.4
728,260 + +0.5
728,278 - -1.2
728,279 - +0.3
728,282 + +2.7
728,287 - +1.6
728,299 - +0.3
728,308 + +0.5
728,314 + -0.6
728,432 - -0.1
728,436 - +0.4
728,437 + +1.1
728,466 + -1.6
728,590 - +1.1
728,738 - -0.2
728,748 + +1.1
728,751 + +0.2
728,757 + -0.9
729,063 + 12214 mRNA_3846 0.20 +0.1
729,087 + 12214 mRNA_3846 0.21 +0.8
729,104 + 12214 mRNA_3846 0.22 -1.0
729,164 - 12214 mRNA_3846 0.25 +0.3
729,239 - 12214 mRNA_3846 0.28 +0.7
729,595 + 12214 mRNA_3846 0.44 +0.4
729,788 + 12214 mRNA_3846 0.53 -0.9
729,860 - 12214 mRNA_3846 0.56 +0.6
729,951 - 12214 mRNA_3846 0.60 +0.4
730,049 - 12214 mRNA_3846 0.64 +0.1
730,082 + 12214 mRNA_3846 0.66 +0.1
730,195 - 12214 mRNA_3846 0.71 +0.2
730,366 - 12214 mRNA_3846 0.79 +1.2
730,617 - 12214 mRNA_3846 0.90 +0.3
731,348 + +0.1
731,452 - +0.8
731,673 + -0.4
731,726 - +0.2
731,785 - +1.8

Or see this region's nucleotide sequence