Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3862

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12229 and 12230 are separated by 217 nucleotides12230 and 12231 are separated by 501 nucleotides mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766,288 to 767,441 12229 mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767,659 to 769,319 12230 mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769,821 to 771,118 12231

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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766,759 + 12229 mRNA_3861 0.41 +1.2
766,782 + 12229 mRNA_3861 0.43 +0.8
766,861 + 12229 mRNA_3861 0.50 +0.5
766,935 + 12229 mRNA_3861 0.56 +0.9
766,936 + 12229 mRNA_3861 0.56 -1.4
766,966 + 12229 mRNA_3861 0.59 +0.5
767,016 - 12229 mRNA_3861 0.63 +1.5
767,317 - 12229 mRNA_3861 0.89 +0.7
767,320 - 12229 mRNA_3861 0.89 -0.1
767,353 - +0.1
767,370 + +1.8
767,519 + -0.3
767,594 - -1.3
767,595 + +0.4
767,642 - +0.1
767,741 + +0.1
767,845 - 12230 mRNA_3862 0.11 +0.5
768,086 + 12230 mRNA_3862 0.26 +0.8
768,188 + 12230 mRNA_3862 0.32 -1.2
768,218 + 12230 mRNA_3862 0.34 -0.1
768,416 + 12230 mRNA_3862 0.46 +1.7
768,894 - 12230 mRNA_3862 0.74 +0.2
768,916 - 12230 mRNA_3862 0.76 +0.4
769,102 - 12230 mRNA_3862 0.87 +1.2
769,234 - +1.1
769,310 + +1.6
769,409 - +0.1
769,419 + +0.5
769,468 - +1.5
769,862 - -0.9
769,868 + +0.4
769,909 + +0.2

Or see this region's nucleotide sequence