Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3927

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12294 and 12295 are separated by 157 nucleotides12295 and 12296 are separated by 225 nucleotides mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919,864 to 921,279 12294 mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921,437 to 922,417 12295 mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922,643 to 925,532 12296

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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920,547 - 12294 mRNA_3926 0.48 +0.9
920,558 - 12294 mRNA_3926 0.49 -1.3
920,676 - 12294 mRNA_3926 0.57 +0.3
921,127 - 12294 mRNA_3926 0.89 +1.2
921,439 + +0.9
922,450 - +0.5
922,468 - +0.6
922,517 + +1.3
922,519 - +0.9
922,522 - -1.0
922,523 - +0.3
922,523 - -0.3
922,542 - -0.1
922,542 + +0.0
922,543 + -0.7
922,562 - +0.6
922,564 + +1.6
922,564 + -0.9
922,564 + -0.0
922,565 - +1.3
922,568 + -0.2
922,569 - +0.3
922,569 - +0.3
922,572 + +1.3
922,573 + +0.4
922,575 + -0.2
922,577 - +0.2
922,579 - -0.1
922,581 + -0.6
922,587 + -0.3
922,587 - +0.1
922,591 + +0.2
922,598 + +0.1
922,607 + -0.6
922,746 - +0.4
922,859 - -0.4
922,905 + +0.1
923,042 - 12296 mRNA_3928 0.14 +0.4
923,181 - 12296 mRNA_3928 0.19 -0.5
923,183 + 12296 mRNA_3928 0.19 +0.5

Or see this region's nucleotide sequence